One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.132633_1jZuyg/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.132633_1jZuyg/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift10 ; 134 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift10 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=11; shift=10; ncol=21; ----------wwaAAAGTcww
; Alignment reference
a	0	0	0	0	0	0	0	0	0	0	55	44	111	168	167	170	0	1	32	60	66
c	0	0	0	0	0	0	0	0	0	0	27	30	23	0	0	1	0	0	94	21	26
g	0	0	0	0	0	0	0	0	0	0	39	39	18	1	0	0	172	0	20	34	29
t	0	0	0	0	0	0	0	0	0	0	51	59	20	3	5	1	0	171	26	57	51
AT5G63260.DAP_M0340_AthalianaCistrome_shift10 (AT5G63260.DAP:M0340:AthalianaCistrome) 0.864 0.864 7.855 0.931 0.948 34 1 6 2 9 10.400 2 
; oligos_5-8nt_m1 versus AT5G63260.DAP_M0340_AthalianaCistrome (AT5G63260.DAP:M0340:AthalianaCistrome); m=2/133; ncol2=11; w=11; offset=0; strand=D; shift=10; score=   10.4; ----------sAWAAAGKdra
; cor=0.864; Ncor=0.864; logoDP=7.855; NsEucl=0.931; NSW=0.948; rcor=34; rNcor=1; rlogoDP=6; rNsEucl=2; rNSW=9; rank_mean=10.400; match_rank=2
a	0	0	0	0	0	0	0	0	0	0	109	453	433	600	600	599	0	0	191	380	300
c	0	0	0	0	0	0	0	0	0	0	163	28	0	0	0	0	0	25	41	6	138
g	0	0	0	0	0	0	0	0	0	0	197	70	0	0	0	1	600	164	154	176	38
t	0	0	0	0	0	0	0	0	0	0	131	49	167	0	0	0	0	411	214	38	124
At4g38000.ampDAP_M0275_AthalianaCistrome_shift10 (At4g38000.ampDAP:M0275:AthalianaCistrome) 0.853 0.853 7.774 0.927 0.942 42 2 8 11 24 17.400 4 
; oligos_5-8nt_m1 versus At4g38000.ampDAP_M0275_AthalianaCistrome (At4g38000.ampDAP:M0275:AthalianaCistrome); m=4/133; ncol2=11; w=11; offset=0; strand=D; shift=10; score=   17.4; ----------sAWAAAGTwaa
; cor=0.853; Ncor=0.853; logoDP=7.774; NsEucl=0.927; NSW=0.942; rcor=42; rNcor=2; rlogoDP=8; rNsEucl=11; rNSW=24; rank_mean=17.400; match_rank=4
a	0	0	0	0	0	0	0	0	0	0	131	524	423	599	599	599	0	20	231	346	302
c	0	0	0	0	0	0	0	0	0	0	181	23	0	0	0	0	0	46	35	35	80
g	0	0	0	0	0	0	0	0	0	0	213	24	0	0	0	0	599	110	74	145	90
t	0	0	0	0	0	0	0	0	0	0	74	28	176	0	0	0	0	423	259	73	127
DAG2_MA1271.1_JASPAR_shift10 (DAG2:MA1271.1:JASPAR) 0.847 0.847 7.640 0.926 0.940 51 3 11 17 29 22.200 8 
; oligos_5-8nt_m1 versus DAG2_MA1271.1_JASPAR (DAG2:MA1271.1:JASPAR); m=8/133; ncol2=11; w=11; offset=0; strand=D; shift=10; score=   22.2; ----------sAAAAAGkdra
; cor=0.847; Ncor=0.847; logoDP=7.640; NsEucl=0.926; NSW=0.940; rcor=51; rNcor=3; rlogoDP=11; rNsEucl=17; rNSW=29; rank_mean=22.200; match_rank=8
a	0	0	0	0	0	0	0	0	0	0	123	492	471	600	600	597	0	13	206	390	329
c	0	0	0	0	0	0	0	0	0	0	188	31	0	0	0	0	0	37	45	10	97
g	0	0	0	0	0	0	0	0	0	0	175	51	0	0	0	3	600	185	152	156	49
t	0	0	0	0	0	0	0	0	0	0	114	26	129	0	0	0	0	365	197	44	125
AT5G63260.ampDAP_M0343_AthalianaCistrome_shift10 (AT5G63260.ampDAP:M0343:AthalianaCistrome) 0.843 0.843 7.641 0.924 0.936 56 4 10 33 38 28.200 11 
; oligos_5-8nt_m1 versus AT5G63260.ampDAP_M0343_AthalianaCistrome (AT5G63260.ampDAP:M0343:AthalianaCistrome); m=11/133; ncol2=11; w=11; offset=0; strand=D; shift=10; score=   28.2; ----------sAAAAAGTdaa
; cor=0.843; Ncor=0.843; logoDP=7.641; NsEucl=0.924; NSW=0.936; rcor=56; rNcor=4; rlogoDP=10; rNsEucl=33; rNSW=38; rank_mean=28.200; match_rank=11
a	0	0	0	0	0	0	0	0	0	0	101	547	502	594	600	591	0	5	205	407	314
c	0	0	0	0	0	0	0	0	0	0	199	0	1	6	0	0	0	45	31	29	130
g	0	0	0	0	0	0	0	0	0	0	173	29	0	0	0	9	600	135	165	93	41
t	0	0	0	0	0	0	0	0	0	0	127	24	97	0	0	0	0	415	199	71	115